Research

Build a section-by-section claim–evidence matrix (`outline/claim_evidence_matrix.md`) from the outline and paper notes. **Trigger**: claim–evidence matrix, evidence mapping, 证据矩阵, 主张-证据对齐. **Use when**: 写 prose 之前需要把每个小节的可检验主张与证据来源显式化（outline + paper notes 已就绪）。 **Skip if**: 缺少 `outline/outline.yml` 或 `papers/paper_notes.jsonl`。 **Network**: none. **Guardrail**: bullets-only（NO PROSE）；每个 claim 至少 2 个证据来源（或显式说明例外）。

Raise citation diversity/density (NO NEW FACTS): generate an in-scope “citation budget” plan per H3 so drafts stop failing the global unique-citation gate and stop looking under-cited. **Trigger**: cite boost, citation budget, unique citations too low, add more citations, improve reference density, 引用太少, 增加引用, 引用密度. **Use when**: `pipeline-auditor` FAILs due to low unique citations, or you want to increase cite density without changing claims. **Skip if**: you need new papers (fix C1/C2 mappi...

Regression-check citation anchoring (citations stay in the same subsection) to prevent “polish drift” that breaks claim→evidence alignment. **Trigger**: citation anchoring, citation drift, regression, cite stability, 引用锚定, 引用漂移. **Use when**: after editing/polishing, you want to confirm citations did not migrate across `###` subsections. **Skip if**: you do not have a baseline anchor file yet. **Network**: none. **Guardrail**: analysis-only; do not edit content.

Write H2 chapter lead blocks (`sections/S<sec_id>_lead.md`) that preview the chapter\x27s comparison lens and connect its H3 subsections, without adding new facts. **Trigger**: chapter lead writer, section lead writer, H2 lead, lead paragraph, 章节导读, 章节导语. **Use when**: you have H2 chapters with multiple H3 subsections and the draft reads like \"paragraph islands\" across subsections. **Skip if**: the outline has no H3 subsections, or `outline/chapter_briefs.jsonl` is missing (build briefs fir...

Build per-chapter (H2) writing briefs (NO PROSE) so the final survey reads like a paper (chapter leads + cross-H3 coherence) without inflating the ToC. **Trigger**: chapter briefs, H2 briefs, chapter lead plan, section intent, 章节意图, 章节导读, H2 卡片. **Use when**: `outline/outline.yml` + `outline/subsection_briefs.jsonl` exist and you want thicker chapters (fewer headings, more logic). **Skip if**: the outline is still changing heavily (fix outline/mapping first). **Network**: none. **Guardrail**:...

Add bias/risk-of-bias assessment fields to an extraction table and populate them consistently. **Trigger**: bias, risk-of-bias, RoB, evidence quality, 偏倚评估, 证据质量. **Use when**: systematic review 已生成 `papers/extraction_table.csv`，需要在 synthesis 前补齐偏倚/质量字段。 **Skip if**: 不是 systematic review，或还没有 `papers/extraction_table.csv`。 **Network**: none. **Guardrail**: 使用简单可复核刻度（low/unclear/high）+ 简短 notes；保持字段一致性。

Retrieve paper metadata from arXiv using keyword queries and save results as JSONL (`papers/papers_raw.jsonl`). **Trigger**: arXiv, arxiv, paper search, metadata retrieval, 文献检索, 论文检索, 拉取元数据, 离线导入. **Use when**: 需要一个初始论文集合（survey/snapshot 的 Stage C1），来源为 arXiv（在线检索或离线导入 export）。 **Skip if**: 已经有可用的 `papers/papers_raw.jsonl`，或数据源不是 arXiv。 **Network**: 在线检索需要网络；离线 `--input <export.*>` 不需要网络。 **Guardrail**: 只做 metadata；不要在 `output/` 写长 prose。

Audit the workspace against the pipeline artifact contract (DONE outputs + pipeline target_artifacts). Writes `output/CONTRACT_REPORT.md`. **Trigger**: contract audit, artifact contract, missing artifacts, target_artifacts, CONTRACT_REPORT. **Use when**: you want an auditable PASS/FAIL view of whether a workspace is complete and self-contained (end of run or before sharing). **Skip if**: you are still intentionally mid-run and don’t care about completeness yet (but it’s still useful as a snap...

Download a small corpus of open-access arXiv survey/review PDFs about LLM agents and extract text for style learning. **Trigger**: agent survey corpus, ref corpus, download surveys, 学习综述写法, 下载 survey. **Use when**: you want to study how real agent surveys structure sections (6–8 H2), size subsections, and write evidence-backed comparisons. **Skip if**: you cannot download PDFs (no network) or you don't want local PDF files. **Network**: required. **Guardrail**: only download arXiv PDFs; store...

Performs quality control, citation validation, and fact-checking before human review. Use after research is complete to verify all sources and claims before production.

Researches project histories, changelogs, developer interviews, and open source documentation. Use when the album subject involves technology projects or developer stories.

Researches malware analysis, CVEs, attribution reports, and hacker community sources. Use when the album subject involves cybersecurity incidents or threat actors.

Researches the subject's own words from tweets, blogs, forums, and chat logs. Use when research needs direct quotes or first-person accounts.

Researches court documents, indictments, plea agreements, and sentencing records. Use when the album subject involves legal proceedings or criminal cases.

Researches investigative articles, interviews, and news coverage. Use when research needs journalistic sources for cross-referencing or additional context.

Researches archives, contemporary accounts, and timeline reconstruction. Use when the album subject involves historical events that need primary source verification.

Researches DOJ/FBI/SEC press releases, agency statements, and government sources. Use when research needs official government records or agency documentation.

Researches SEC filings, earnings calls, analyst reports, and market data. Use when the album subject involves financial crimes, corporate stories, or market events.

Researches personal backgrounds, interviews, motivations, and humanizing details. Use when research needs biographical context about people involved in the album's subject.

Conducts investigative-grade research with primary source analysis, cross-verification, and trial-level depth. Use when an album needs factual research, source material, or verification of claims.

Searches and retrieves documents from free public sources using automated browser navigation. Use when research needs primary source documents like court filings, government reports, or public records.

This skill identifies the locations of known transcription factor (TF) binding motifs within genomic regions such as ChIP-seq or ATAC-seq peaks. It utilizes HOMER to search for specific sequence motifs defined by position-specific scoring matrices (PSSMs) from known motif databases. Use this skill when you need to detect the presence and precise genomic coordinates of known TF binding motifs within experimentally defined regions such as ChIP-seq or ATAC-seq peaks.

This skill identifies novel transcription factor binding motifs in the promoter regions of genes, or directly from genomic regions of interest such as ChIP-seq peaks, ATAC-seq accessible sites, or differentially acessible regions. It employs HOMER (Hypergeometric Optimization of Motif Enrichment) to detect both known and previously uncharacterized sequence motifs enriched within the supplied genomic intervals. Use the skill when you need to uncover sequence motifs enriched or want to know whi...

Assists in writing high-quality content by conducting research, adding citations, improving hooks, iterating on outlines, and providing real-time feedback on each section. Transforms your writing process from solo effort to collaborative partnership.