Research

Expert-thinking profile for Parasitologist (field / laboratory parasitology + public- health surveillance): Reasons from parasite life cycles, WHO NTD program logic, and diagnostic performance (Kato-Katz, qPCR/MIQE, RDTs); troubleshoots microscopy artifacts, MDA surveillance, and anthelmintic resistance.

Search the web, extract URL content, enrich datasets, and run deep research using parallel-cli, prioritizing academic and scientific sources. Use for ANY web-related task: looking things up, fetching pages or academic PDFs, bulk data enrichment, and exhaustive multi-source research reports — even when the user doesn't mention 'parallel' or 'web' explicitly.

Use when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.

Expert-thinking profile for Paleontologist (field / museum / computational): Reason from **taphonomic filters** first: biostratinomy, diagenesis, time-averaging, and Signor–Lipps before biostratigraphic correlation, morphometrics, or phylogenetic claims.

Expert-thinking profile for Paleoclimatologist (proxy reconstruction / chronology & age modeling / spectral & cyclostratigraphy / model-data comparison (PMIP, DeepMIP)): Reasons from proxy transfer functions, archive integration time, and orbital forcing through Bayesian age-depth modeling (Bacon, OxCal), IntCal20 radiocarbon calibration, PAGES2k compositing, and proxy-equivalent PMIP/DeepMIP comparison while treating age- model uncertainty, non-stationary calibration (CO2...

Expert-thinking profile for Paleoceanographer (field / observational marine paleoceanography): Reasons from foraminiferal proxy system science (G. ruber, Cibicidoides, species/size fraction), Barker Mg/Ca cleaning and Anand/Gray calibrations, paired planktic δ¹⁸O–Mg/Ca and LR04 benthic stacks, IODP depth scales and splice ties, and AMOC fingerprints (benthic δ¹³C gradients, εNd, ²³¹Pa/²³⁰Th, sortable silt)...

Expert-thinking profile for Paleobotanist (field / laboratory paleobotany & palynology): Reasons from phytotaphonomy and preservation mode (compression, permineralization, palynomorphs); prepares coal-ball peels and cuticle/maceral workflows; applies LMA/CLAMP/DiLP and stomatal/Franks CO₂ proxies; uses PBDB, Neotoma, IFPNI/PFNR, and ICN fossil-taxon nomenclature while treating transport bias...

Use for authorized OT/ICS security assessment covering Purdue model zoning, PLC/SCADA exposure, industrial protocol discovery, and safe passive-first evaluation.

Expert-thinking profile for Orthopedic Biomechanist (clinical / research): Reasons from joint kinematics, forces, moments, and tissue stress through optical motion capture with force plates, inverse dynamics with de Leva segment parameters, OpenSim/AnyBody and FEBio/Abaqus models, and ISO 14243 wear testing while treating skin motion artifact, cardan gimbal lock, unnormalized moments, and...

Expert-thinking profile for Ornithologist (field / observational / banding / bioacoustics / population monitoring): Reasons from detectability-limited surveys through BBS/MAPS protocols, distance sampling and unmarked occupancy, eBird/auk hygiene, BirdNET–Raven validation, BBL permitting, Pyle molt scoring, MOTUS/FlightR connectivity, and AviList/Clements taxonomy while treating roadside bias, space-for- time pseudo-replicates, and...

Expert-thinking profile for Organometallic Chemist (air-sensitive synthesis / homogeneous catalysis / multinuclear NMR & SCXRD / mechanistic kinetics): Reasons from electron counting, oxidation states, and elementary catalytic steps through Schlenk/glovebox technique, multinuclear NMR and νCO IR, SCXRD with checkCIF, and TON/TOF kinetics while treating air oxidation to oxo/hydroxo species, paramagnetic line-broadening, and trace or colloidal-metal leaching as...

Expert-thinking profile for Organoid Biologist (wet-lab / stem-cell and 3D epithelial culture): Reasons from niche signaling, Matrigel scaffolds, and culture geometry; engineers Wnt/R-spondin expansion, ALI differentiation, and PDO biobanks while treating matrix lot effects and donor-level pseudoreplication as first-class failure modes.

Expert-thinking profile for Organic Chemist (wet-lab / synthetic and methods organic chemistry): Reasons from retrosynthesis, protecting-group strategy, and stereoelectronics; executes air-sensitive chemistry, flash/LC-MS purification, and NMR/IR/MS proof; mines SciFinder/Reaxys and reports ACS-grade experimentals with E-factor/PMI and pyrophoric safety discipline.

Expert-thinking profile for Oral Biologist (clinical / research): Reasons from biofilm dysbiosis, demineralization-remineralization balance, and host-mineral-microbe partitioning through pH-cycling and ligature models, 16S/shotgun metagenomics (DADA2/QIIME2, HOMD), micro-CT, and ICDAS/AAP-EFP staging, while treating saliva- ignored caries models, low-biomass contamination...

Expert-thinking profile for Optoelectronics Engineer (device R&D / characterization / PIC & semiconductor photonics): Reasons from photon–electron conversion, ABC recombination, and IQE/EQE/WPE budgets; runs LIV/pulsed laser, EMVA 1288, and responsivity metrology; designs with Lumerical/Sentaurus/COMSOL TCAD and foundry PDKs while treating efficiency droop, thermal rollover, LIV kinks, and calibration geometry as first-class failure...

Expert-thinking profile for Optical Physicist (ultracold AMO / laser cooling & trapping / optical lattices & tweezers / precision clocks / quantum simulation): Reasons from quantized atom-field coupling, recoil and trap energy scales (Γ, E_rec, U/J, κ), and coupled instability-versus-systematic budgets through optical Bloch equations, in-situ lattice-depth and Rabi calibration, QuTiP and ARC modeling, and Allan-deviation and clock systematic tables, while treating...

Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports ...

Use this skill to build academic-style .docx output: journal / conference / thesis chapters carrying formal citation style (APA, Chicago, IEEE, MLA), numbered equations, figure & table cross-references, footnotes/endnotes, bibliography, or multi-column journal layout. Trigger on: 'research paper', 'journal paper', 'conference paper', 'manuscript', 'thesis', 'APA', 'MLA', 'Chicago', 'IEEE two-column', 'bibliography', 'hanging indent', 'citation style', 'abstract + keywords', 'equation numberin...

Expert-thinking profile for Oceanographer (seagoing / interdisciplinary / water-mass & tracer analysis / air-sea flux & biogeochemistry / TEOS-10): Reasons from basin-scale budgets, three-dimensional circulation, and forcing-transport-transformation coupling through θ–S and OMP water-mass analysis, transient-tracer ventilation ages (CFC/SF₆/¹⁴C), GO-SHIP/Argo/SOCAT networks, and TEOS-10 thermodynamics while treating mesoscale aliasing of single sections, mixed...

Expert-thinking profile for Observational Astronomer (multi-wavelength observational / calibration & photometry / time-domain & transients / Bayesian inference / multi- messenger): Reasons from radiative transfer, the distance ladder, and statistical- versus-systematic error budgets through HST/JWST/ALMA pipelines, Gaia DR3 astrometry, archives (SIMBAD, MAST, HEASARC), and emcee/dynesty inference while treating the look- elsewhere effect, PSF and flat-field artifacts, photo-z catastrophic...

Expert-thinking profile for Nutrition Scientist (nutritional epidemiology / controlled feeding trials / dietary assessment & biomarker validation / survey analysis (NHANES, DLW)): Reasons from intake measurement error, energy balance, and causal triangulation through doubly-labeled-water validation, NCI usual-intake models, DRI (EAR/RDA/UL) frameworks, crossover feeding trials, and Mendelian randomization while treating dietary underreporting, reverse causation (sick-quitter), unadjusted...

Personalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevant

Expert-thinking profile for Numerical Analyst (theoretical / computational scientific computing): Reasons from well-posedness, discretization, conditioning, and stability; verifies codes with MMS and convergence studies; treats cancellation, stiffness, and solver tolerance floors as first-class failure modes.

Expert-thinking profile for Number Theorist (theoretical / computational pure and arithmetic number theory): Reasons from primes, congruences, L-functions, and the Langlands web; chooses algebraic, analytic, and sieve methods; validates with SageMath/PARI/LMFDB while treating PARI stack overflows, conditional-proof leaks, and CRT moduli errors as first-class failure modes.