Claude Skills by userInner

Process, clean, compare, and search tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity networks. Use pyopenms instead for LC-MS feature detection or proteomics pipelines.

Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.

Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.

Evidence-first live messaging workflow for ECC. Use when the user wants to read texts or DMs, recover a recent one-time code, inspect a thread before replying, or prove which message source was actually checked.

End-to-end methodology for AI agents and software engineers to add machine learning algorithms to existing non-ML codebases. Covers problem framing, data readiness, architectural decoupling, and baseline model integration. Use when adding a machine learning capability to a codebase that has none, from problem framing through a baseline model.

Production machine-learning engineering workflow for data contracts, reproducible training, model evaluation, deployment, monitoring, and rollback. Use when building, reviewing, or hardening ML systems beyond one-off notebooks.

Production machine-learning engineering workflow for data contracts, reproducible training, model evaluation, deployment, monitoring, and rollback. Use when building, reviewing, or hardening ML systems beyond one-off notebooks.

Production machine-learning engineering workflow for data contracts, reproducible training, model evaluation, deployment, monitoring, and rollback. Use when building, reviewing, or hardening ML systems beyond one-off notebooks.

Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.

Motion tokens, spring presets, performance rules, device adaptation, accessibility enforcement, and SSR safety for React / Next.js using motion/react. Foundation layer — all other motion skills depend on this. Use when setting up motion tokens, spring presets, reduced-motion handling, or SSR-safe animation in React or Next.js.

Operate and extend NanoClaw v2, ECC's zero-dependency session-aware REPL built on claude -p. Use when operating or extending the NanoClaw REPL.

Install, detect, and operate the optional Nasiko agent control plane through ECC with pinned artifacts, explicit consent, and telemetry and secrets boundaries.

Safe Python Netmiko patterns for read-only collection, bounded batch SSH, TextFSM parsing, guarded config changes, timeouts, and network automation error handling. Use when automating network device access with Python Netmiko, whether collecting state or pushing guarded config changes.

Diagnostics-only BGP troubleshooting patterns for neighbor state, route exchange, prefix policy, AS path inspection, and safe evidence collection. Use when a BGP neighbor is down, routes are missing, or prefix policy and AS path need inspection.

Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config, DSL2, processes/channels/operators, samplesheets, or wants to run a community pipeline (e.g. nf-core/rnaseq, nf-core/sarek), write or test a module/subworkflow with nf-test, configure executors/containers (Docker, Singularity/Apptainer, Conda, Wave), scale a workflow to HPC/SLURM or cloud (AWS Batch, Google Batch, Azure, Kubernetes), or ...

Next.js 16+ and Turbopack — incremental bundling, FS caching, dev speed, and when to use Turbopack vs webpack.

Next.js 16+ and Turbopack — incremental bundling, FS caching, dev speed, and when to use Turbopack vs webpack.

Next.js 16+ and Turbopack — incremental bundling, FS caching, dev speed, and when to use Turbopack vs webpack.

Prevent Ethereum hashing bugs in JavaScript and TypeScript. Node's sha3-256 is NIST SHA3, not Ethereum Keccak-256, and silently breaks selectors, signatures, storage slots, and address derivation. Use when hashing for Ethereum in JavaScript or TypeScript, or when a selector, signature, storage slot, or derived address is wrong.

Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

Query the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals are homozygous-reference at a position, which variants exist in the dataset or carried by specified individuals in a gene or region, the relatedness between two specified individ...

为 OpenClaw AI Agent 锻造完整的龙虾灵魂方案。根据用户偏好或随机抽卡， 输出身份定位、灵魂描述(SOUL.md)、角色化底线规则、名字和头像生图提示词。 如当前环境提供已审核的生图 skill，可自动生成统一风格头像图片。 当用户需要创建、设计或定制 OpenClaw 龙虾灵魂时使用。 不适用于：微调已有 SOUL.md、非 OpenClaw 平台的角色设计、纯工具型无性格 Agent。 触发词：龙虾灵魂、虾魂、OpenClaw 灵魂、养虾灵魂、龙虾角色、龙虾定位、 龙虾剧本杀角色、龙虾游戏角色、龙虾 NPC、龙虾性格、龙虾背景故事、 lobster soul、lobster character、抽卡、随机龙虾、龙虾 SOUL、gacha。 Use when creating, designing, or customizing an OpenClaw lobster persona — identity, SOUL.md, name, or avatar prompt.

Open-source pipeline: fork, sanitize, and package private projects for safe public release. Chains 3 agents (forker, sanitizer, packager). Triggers: '/opensource', 'open source this', 'make this public', 'prepare for open source'. Use when a private project must be forked, stripped of secrets, and packaged for public release.

Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis. Use pylabrobot instead when one workflow must support multiple robot vendors.

GPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster. Use for CUDA/GPU optimization; CPU-bound NumPy, SciPy, pandas, scikit-learn, NetworkX, scikit-image, vector-search, image-processing, graph, simulation, or file-I/O workloads; CuPy, cuDF, cuML, cuGraph, cuVS, cuCIM, KvikIO, Warp, Newton, Numba-CUDA, or RAFT questions; and profiling, memory-transfer, kernel, or multi-GPU bottlenecks. Also use when large data-parallel Python code is slow and...

Orchestrate building a brand-new feature end to end — research, plan, TDD implementation, review, and gated commit — by delegating each phase to the matching ECC agent. Use when adding a capability that does not exist yet.

Orchestrate bootstrapping a working MVP from a design or spec document — ingest the doc, plan thin vertical slices, scaffold the first end-to-end slice, then TDD-implement, review, and gated commit. Use to turn an SDD/PRD into a running starting point. Use when a design or spec document must become a running MVP through planned vertical slices.

Orchestrate fixing a bug — reproduce it as a failing regression test, fix to green, review, and gated commit — by delegating each phase to the matching ECC agent. Use when existing behavior is broken or wrong.

Shared orchestration engine for the orch-* skill family. Defines the gated Research-Plan-TDD-Review-Commit pipeline, the size classifier, the agent map, and the two human gates that the orch-* operation skills delegate to. Not usually invoked directly. Not usually invoked directly; it applies when an orch-* skill delegates its gated Research-Plan-TDD-Review-Commit pipeline.

Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or submit to schedulers (LSF/Slurm/PBS/SGE), and triage execution failures. Triggers on requests to run pacsomatic, prepare launch commands/scripts, perform dry-run checks, or troubleshoot pipeline startup and scheduler submission errors.

Use when the user wants a task done much faster through parallel work, concurrent agents, batched tool calls, isolated worktrees, or many independent verification lanes without losing correctness.

Use PathML for local, research-only computational pathology workflows: load and tile slides, build preprocessing and QC pipelines, manage h5path data, quantify multiplex images, construct spatial graphs, and plan bounded model inference.

Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch or JAX. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.

Build with and use Pi, the minimal terminal coding harness. Use for installing Pi, configuring providers/models/settings/environment variables, creating Pi skills/extensions/packages/themes/prompt templates, embedding Pi through the SDK, integrating over RPC or JSON event streams, parsing sessions, running local models through the llama.cpp router, developing custom Pi providers and TUI components, or using ecosystem packages such as pi-subagents (delegation/orchestration), pi-mcp-adapter (MC...

Open plans and HTML artifacts in a local browser canvas where the human annotates elements, chats, and approves or requests changes without leaving the page. Use when presenting a plan for review, or when feedback like "move this, change that" is easier pointed at than typed.

Open plans and HTML artifacts in a local browser canvas where the human annotates elements, chats, and approves or requests changes without leaving the page. Use when presenting a plan for review, or when feedback like "move this, change that" is easier pointed at than typed.

Read a plan document, decompose it into steps, design a per-step agent chain from the ECC catalogue, and emit ready-to-paste /orchestrate custom prompts. Generative only — never invokes /orchestrate itself. Use when the user has a multi-step plan and wants to drive it through orchestrate without composing chains by hand.

Write-time code quality enforcement using Plankton — auto-formatting, linting, and Claude-powered fixes on every file edit via hooks. Use when setting up write-time formatting, linting, or auto-fix hooks on file edits.

PostgreSQL database patterns for query optimization, schema design, indexing, and security. Quick reference for common patterns, index types, data types, and anti-pattern detection. Based on Supabase best practices.

Use this skill any time a .pptx or .potx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx or .potx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates (.potx), layouts, speaker notes, or comments. Trigger whenever th...

Review prediction-market, basket, oracle, and trading-agent workflows for compliance, safety, data-quality, privacy, and execution risk. Use before any workflow handles venue auth, user portfolio data, API keys, or trade planning.

Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.

Operate execution flow across GitHub and Linear by triaging issues and pull requests, linking active work, and keeping GitHub public-facing while Linear remains the internal execution layer. Use when the user wants backlog control, PR triage, or GitHub-to-Linear coordination.

Analyze raw prompts, identify intent and gaps, match ECC components (skills/commands/agents/hooks), and output a ready-to-paste optimized prompt. Advisory role only — never executes the task itself. TRIGGER when: user says "optimize prompt", "improve my prompt", "how to write a prompt for", "help me prompt", "rewrite this prompt", or explicitly asks to enhance prompt quality. Also triggers on Chinese equivalents: "优化prompt", "改进prompt", "怎么写prompt", "帮我优化这个指令". DO NOT TRIGGER when: user wants...

Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing mutation plans. The bundled client makes bounded official-host GET requests only with explicit --execute. Use only for tasks explicitly targeting protocols.io or an exact protocols.io protocol version.

Use pydicom to read, inspect, write, transform, and safely preflight local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification review.

Develop and review PyLabRobot lab-automation resources, liquid-handling plans, offline simulations, and supported-device integrations. Use for PyLabRobot protocols or API questions; keep physical execution behind an explicit operator safety gate.

Analyze, validate, convert, and transform materials structures and computed materials data with current pymatgen APIs, including local phase diagrams, symmetry sensitivity, electronic-structure I/O, and explicitly bounded Materials Project queries.

Complete mass spectrometry analysis platform. Use for proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free and isobaric quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.