Claude Skills by HolobiomicsLab

Use when when you have extracted a peak feature table (CSV or tabular

Use when after executing Formation formatting on processed feature tables

Use when after completing kNN imputation, outlier sample removal, and

Use when you have raw DIA mass spectrometry files (.raw, .d, or .wiff

Use when after running QC analysis on NMR or MS metabolomic data and

Use when you have sequential QCpool (pooled quality control) samples

Use when you have raw quantification data (abundance or intensity values

Use when after autoQ has extracted peak area measurements for isotopologues

Use when apply quantile normalization after filtering a Salmon-derived

Use when you have raw MS data in a supported instrument format (Agilent

Use when when you have metabolomics results from multiple studies reporting

Use when you have raw MS intensity tables showing systematic drift during

Use when when you have SMILES strings or molecular formulae for N-Me

Use when when you have a collection of N-Me derived unsaturated sterol

Use when you have a set of RDKit-generated conformers ranked by ASE-ANI

Use when when you have interpolated or optimized molecular geometries

Use when after feature clustering has been applied to co-eluting LC-MS

Use when when you need to enable non-programmer mass spectrometry users

Use when when you have implemented or obtained a spectral library search

Use when after parsing a MassQL query string into an abstract syntax

Use when after executing a MassQL query against mzML mass spectrometry

Use when after executing MassQL queries against mzML mass spectrometry

Use when when you have a user-provided or system-generated query string

Use when when you have queued one or more spectral processing operations

Use when after loading search result files (e.g., from DIA-NN or OpenSwath)

Use when you have a raw or partially processed multi-class or time-series

Use when when converting raw metabolomics data (tab-delimited text files,

Use when you have untargeted LC/MS metabolomics data from stable isotope

Use when after installing an R package from a non-CRAN repository (such

Use when when you have extracted multiple spectral attributes (e.g.,

Use when when you have instrument-exported text files (e.g., Sciex MultiQuant

Use when when you have autoQ output containing peak area measurements

Use when you have mzPeak files (Parquet-based archives containing mass

Use when you have preprocessed MSI data in Cardinal format (post-peakBin)

Use when when xcms has produced misaligned feature groups and you need

Use when you have a peak table matrix with NA values that need to be

Use when after completing Part 4 (Identification of ISF Features) in

Use when a Shiny application or R-based tool is known to run on only

Use when when developing or reproducing an R-based analysis that integrates

Use when after AutoTuner has completed peak identification (TIC analysis),

Use when you have raw lipidomic and metabolomic data files generated

Use when when you have tabular GO enrichment or gene set analysis results

Use when when you have completed a comprehensive ranking of preprocessing

Use when you need to expose capabilities of an external compiled dependency

Use when when you need to verify or retrieve package-internal metadata

Use when you have extracted metadata or spectral information from a Thermo

Use when after extracting structured metadata (e.g., instrument parameters,

'Use when when working with three-part metabolomics data structures (featuredata

Use when after performing assignment operations (assign_ri, assign_smiles)

Use when evaluating alternative implementations of data storage or retrieval