Claude Skills by HolobiomicsLab

Use when after loading feature identification results (e.g., from OpenSwath

Use when after metabolomics data normalization when both QC (quality

Use when after extracting NMR spectra and designating replicate QC samples

Use when after CV-based and blank-contribution filtering when you have

Use when rapid QC-MS is actively monitoring LC-MS data acquisition and

Use when you have processed LC-MS peak detection output or feature tables

Use when when processing a batch of LC-MS samples in mzML or mzXML format

Use when you have a QC-annotated LC-MS feature table (CSV or data frame

Use when you have a QC-annotated feature table (samples × features with

Use when when loading multiple LC-MS runs (mzML files) into an MsExperiment

Use when after feature extraction from XCMS, MS-Dial, or similar tools

Use when normalizing multi-batch metabolomics intensity matrices where

Use when after drift correction and before imputation when you have LC-MS

Use when after drift correction has been applied to your LC-MS peak table

Use when when constructing a sample list from an Excel template for LC/GC-MS

Use when after batch correction of a metabolomics dataset using pooled

Use when your metabolomic dataset contains dedicated QC samples (pooled

Use when after applying one or more mpactr filters (filter_mispicked_ions,

Use when after applying one or more mpactr filters (filter_mispicked_ions,

Use when configuring a new injection-plate design template in InjectionDesign

Use when you have acquired a versioned QC workflow definition file (YAML

Use when you have Sciex Multiquant txt exports containing signal intensities

Use when you have Sciex Multiquant (≥v3.0.3) TXT export files containing

Use when you have raw mass-spectrometry files (MGF, BIOM, mzXML, mzML)

Use when you need to verify that a QIIME 2 artifact (e.g., a Chemical

Use when you have completed parallel QUICK quantum calculations on multiple

Use when you need to publish metabolomics spectra in static media (PDF,

Use when you have a Qt5-based C++ GUI application source tree (e.g.,

Use when you need to restrict a Qt widget's display to a subset of its

Use when you have a feature quantification table exported from MZmine3

Use when when you have Sciex Multiquant TXT export files containing injection

Use when after performing an inner or left join operation to combine

Use when you have loaded a metabolomics dataset with a metabolitedata

Use when after feature integration and imputation when you have QC-annotated

Use when after composite-map peak detection has produced an unfiltered

Use when you have measured IM-MS lipidomics data spiked with U13C labeled

Use when after normalizing a metabolomics featuredata matrix (samples

Use when you have a SummarizedExperiment object from a metabolomics study

Use when after completing doAnalysis on an mzQuality SummarizedExperiment

Use when you have a feature intensity matrix (peak vector) and a corresponding

Use when when importing a new batch of centroided mzML or mzXML LC-MS

Use when after building a SummarizedExperiment from metabolomics measurements

Use when when you have XCMS-preprocessed LC-MS metabolomics data with

Use when your multi-class metabolomic peak table includes quality control

Use when you have txt files exported from Sciex MultiQuant (>v3.0.

Use when you have a SummarizedExperiment object containing pooled quality

Use when you have preprocessed metabolomics data stored in a SummarizedExperiment

Use when your metabolomics dataset contains samples analyzed across multiple

Use when after applying one or more mpactr filters (mispicked, group,

Use when when you have a raw feature abundance matrix with missing values