Research

Search PubMed database for scientific articles and publications to retrieve biomedical literature.

Use when the user wants question-driven help on one paper, including paper understanding, follow-up questions, method or experiment clarification, limitation analysis, or comparison against related work in any language.

Use when the user wants the full multi-stage paper discussion workflow, a comprehensive structured discussion of one paper, or an equivalent full-discussion request in another language.

Perform meta-analysis on scientific studies to synthesize research findings and generate comprehensive reports with statistical summaries.

Use when the user wants a sharp reviewer-style critique of a batch of papers, including triage into must-read versus skippable papers, blunt per-paper criticism, or similar Chinese requests for a daily roast of papers.

Perform meta-analysis on scientific studies to synthesize research findings and generate comprehensive reports with statistical summaries.

Framework-driven audit and optimizer for any markdown vault. Applies 9 frameworks (F1 Anthropic CLAUDE.md, F2 Karpathy Wiki, F3 Caveman, F4 Chroma Context Rot, F5 Anthropic Memory, F6 Progressive Disclosure, G7 Hygiene, F8 Reflection / Anthropic Dreams, F9 Architecture & Discoverability). F9 walks the actual co-worker-Claude discovery chain (root CLAUDE.md → routing → folder Plot.md → file), audits routing-table truthfulness against folder reality, generates/refreshes per-folder Plot.md index...

Phase 0 validation gate — problem framing, competitive analysis, feasibility, and a go/no-go checkpoint before committing to a feature. Use when evaluating whether an idea is worth building, before /story or /design. Trigger on "is this worth building", "validate this idea", "discovery", "should we build".

Investigate bugs with unknown root cause. Spawns fresh-context investigation subagent + parallel /review solve companion, persists hypotheses across iterations, hands off to /fix when root cause found.

Find and summarize new papers matching tracked research interests

Weekly plain-language synthesis of agent health + community growth + economic activity — answers "was this week worth it?" in one notification

Compare current progress against goals with quantified status, velocity, trend, and a concrete next action per goal

Weekly cross-fork customization digest — surfaces where the fleet's enable/disable/var/model decisions diverge from upstream defaults

Inventory active Aeon forks, detect diverged work, surface upstream contribution candidates

Monitor managed Aeon instances — check health, dispatch skills, aggregate status

Search X/Twitter for tweets about a token, keyword, username, or topic — clustered by sub-narrative

End-of-day operational summary — what Aeon shipped, what failed, what needs follow-up

Exhaustive multi-source synthesis on any topic with explicit source credibility tiering and per-finding confidence — analyst-grade, not aggregator-grade

Evolve a skill by generating variations, evaluating them, and updating the best version

Integrate content across multiple documents to produce new understanding. Use for cross-document synthesis, comparison, and reporting from Collections.

Format paper citations from semantic-scholar Notes/Collections to BibTeX format

Derive content from a single Note via LLM-guided extraction, compression, or transformation. Output is grounded entirely in the input — no new information is introduced.

Extract structured metadata (title, authors, year) from paper text using LLM. Use to convert online search results metadata to JSON

Extract bibliography/references from PDF files using GROBID and return a Collection of Notes (one per reference).