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Claude Skills by zongtingwei
github.com/zongtingwei66 skills1 installs160 views
- Imaging Mass CytometryWorkflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.Votes: 0GitHub stars: 26
- MetabolomicsWorkflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.Votes: 0GitHub stars: 26
- ProteomicsMass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.Votes: 0GitHub stars: 26
- Structural BiologyStructure retrieval, confidence-aware AlphaFold DB usage, coordinate download, PAE and pLDDT interpretation, and structure-guided biological annotation.Votes: 0GitHub stars: 26
- Cell AnnotationAutomated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.Votes: 0GitHub stars: 26
- Cell CommunicationWorkflow for ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.Votes: 0GitHub stars: 26
- Multiome ScatacWorkflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.Votes: 0GitHub stars: 26
- Scrna Preprocessing ClusteringStandard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.Votes: 0GitHub stars: 26
- Spatial TranscriptomicsWorkflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready maps.Votes: 0GitHub stars: 26
- Trajectory LineageWorkflow for pseudotime, lineage branching, and state-transition analysis in single-cell data.Votes: 0GitHub stars: 26
- Alternative SplicingWorkflow for event-level and isoform-level splicing analysis with sashimi-ready outputs and splice QC.Votes: 0GitHub stars: 26
- Bulk Rna ExpressionPython-first workflow for bulk RNA-seq expression intake, normalization, sample QC, and downstream-ready matrices.Votes: 0GitHub stars: 26
- Differential ExpressionBulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.Votes: 0GitHub stars: 26
- Ribo SeqWorkflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.Votes: 0GitHub stars: 26
- Rna QuantificationWorkflow for gene and transcript quantification from RNA-seq reads using alignment-based or alignment-free tools.Votes: 0GitHub stars: 26
- Small Rna SeqWorkflow for small RNA and miRNA preprocessing, quantification, differential analysis, and target-oriented interpretation.Votes: 0GitHub stars: 26