Claude Skills by HolobiomicsLab

Use when when importing raw mass spectrometry data from files in supported

Use when you have a binary file (e.g., NV format) with a known fixed-size

Use when you need to reverse-engineer or document the architecture of

Use when you have raw mass spectrometry files in one of the supported

Use when you have a feature table and accompanying CSV metadata that

Use when reading mass spectral library files (particularly MoNA EI or

'Use when you have tabular data (CSV or Excel) with column headers annotated

Use when you have a directory of JSON-formatted annotation files and

Use when immediately after importing raw mass spectrometry data from

Use when you have received new or updated MassBank records (in plain-text

Use when you have located a workflow definition file (YAML or JSON) from

Use when you have completed independent batch searches across one or

Use when when you have preprocessed MS/MS spectra from multiple source

Use when after processing LCMS feature data through Blueshift or Gravity

Use when you have multiple CSV feature lists from different acquisition

Use when after loading a metadata file but before merging it with positive

Use when a metadata table contains compound names and identifiers but

Use when you have mzML-format raw data files from mass spectrometry experiments

Use when when you have experimental metadata (e.g., sample annotations,

Use when you have raw tabular experimental metadata (mass spectrometry

Use when you have a GNPS-format TSV metadata table with mandatory columns

Use when you have extracted raw tabular metadata into JSON form using

Use when mSMetaEnhancer retrieves metadata attributes (SMILES, InChI,

Use when when deploying the ipbhalle/metfragweb container and you need

Use when when a tool like TARDIS extends its API to accept multiple input

Use when you have raw or MZmine-processed MGF files (containing MS/MS

Use when when processing MGF-format MS2 spectral libraries (e.g., GNPS)

Use when when you need to audit, inventory, or report on the curation

Use when you have collected MS/MS spectra from a microbial sample (pure

Use when after training multi-layer perceptron neural networks via cross-validation

Use when when you have paired microbiome-metabolome datasets where only

Use when when you have trained multi-layer perceptron neural network

'Use when you have paired microbiome (16S or metagenomic taxonomy/functions

Use when when you have chemical structures (SMILES or molecular structure

Use when you have draft metabolic reconstructions (in SBML or standard

'Use when you have normalized peak intensities (with assigned molecular

Use when you have a bacterium-phage infection study with normalized peak

Use when when you have raw count matrices from paired microbiome (16S

Use when you have paired microbiome and metabolomic abundance tables

Use when when starting with raw paired microbiome (16S rRNA, metagenomic

Use when you have paired microbiome (16S rRNA, metagenomic) and metabolomic

Use when you have OnDiskMSnExp CE-MS objects with known marker compounds

Use when you have an NMR mixture spectrum and a library of single-compound

Use when after computing compareSpectra similarity scores between an

Use when immediately after importing raw LC-MS peak tables (e.g., Progenesis

Use when when importing metabolomics datasets with multiple studies into

Use when when you have a filtered metabolite abundance matrix with remaining

Use when when you have a metabolomics abundance table with missing values

Use when you have metabolomics peak intensity data with pathway annotations

Use when when comparing the robustness of multiple pathway ranking methods