Claude Skills by HolobiomicsLab

Use when you have raw IM-MS data in Agilent MassHunter (.d) or UIMF format

Use when you have completed msFeaST pipeline preprocessing and generated

Use when after running RAMClustR clustering on XCMS-processed metabolomics

Use when you have loaded a full set of MS scans (e.g., all MS1 scans

Use when you have raw tandem mass spectrometry data in one or more of

Use when when you have downloaded raw spectral datasets from multiple

Use when when you have raw LC-MS/MS data files in mzML, mzXML, or vendor-specific

Use when after converting existing mass spectrometry formats (mzML, vendor

Use when you have raw mass spectrometry data in one or more supported

Use when when you have raw mass spectrometry data in one or more of the

Use when when you have raw MS/MS mass spectrometry data and need to submit

Use when you have three distinct mass spectrometry data sources (quantification

Use when after converting mass-spectrometry data from an existing format

Use when when you need to retrieve a specific MS/MS spectrum from a public

Use when you have acquired multiple MS1 spectra over a defined acquisition

Use when apply TIC normalization when you have raw, unprocessed mass

Use when you have centroided mzML files from LC–MS experiments and need

Use when you have a set of centroided .mzML LC-MS files from a targeted

Use when you have raw lipidomic and metabolomic spectral data files from

Use when you have raw MS/MS spectral data in MGF format from multiple

Use when you have raw or processed MS spectrum data (mz/intensity pairs)

Use when when you have raw LC-MS/MS DDA spectral data (positive and/or

Use when importing raw or public mass spectrometry spectral data in formats

Use when when importing raw mass spectrometry data in formats like mzML,

Use when you have a USI string (e.g., mzspec:GNPS:TASK-d93bdbb5cdda40e48975e6e18a45c3ce-f.mwang87/data/...

Use when after completing MS/MS spectra detection and peak recognition

Use when you have completed a GNPS1 (METABOLOMICS-SNETS, METABOLOMICS-SNETS-V2,

Use when when you have mzPeak format spectrum files and need to work

Use when when raw spectra have been imported from common MS/MS file formats

Use when you have executed MassQL queries on mzML mass spectrometry data

Use when you have generated predicted fragment spectra for a set of compounds

Use when you need to generate synthetic LC/GC-MS feature tables or raw

Use when when you have MS2 .mzML format data files from untargeted metabolomics

Use when you have executed batch spectral searches against two or more

Use when when you have an unknown mass spectrum (query spectrum) and

Use when when you have compiled raw mass spectrometry transition data

Use when you have preprocessed mass spectrometry data (peak-picked, baseline-corrected)

Use when when you have a pre-cleaned spectral library (e.g., GNPS, MoNA,

Use when you have a noisy MS/MS spectrum and need to identify and remove

Use when you have untargeted MS2 spectra from environmental or clinical

Use when after reading an imzML file (continuous or processed format)

Use when you have high-resolution tandem MS spectra (in mzML, mzXML,

Use when you have per-sample MS2 spectra (in matchms-compatible formats

Use when you have a set of preprocessed MS/MS spectra (binned to 10,000

Use when you have a collection of pre-processed MS/MS spectra (binned,

Use when after training a transformer-encoder-based mass spectrometry

Use when when you have preprocessed MS/MS spectral peak data (m/z and

Use when after feature detection and alignment in untargeted MS data

Use when you need to measure the similarity between two MS/MS spectra

Use when you have a detected feature table (m/z, drift_time, retention_time,