Claude Skills by HolobiomicsLab

Use when when you have a tandem mass spectrometry spectrum with a known

Use when after a transformer-based de novo sequencing model (such as

Use when you are attempting to run a web application (such as COLMARvista)

Use when you have IM-MS lipidomic data from samples spiked with U13C-labeled

Use when you have multiple registered LA-ICP-MS elemental images (e.g.,

Use when when you have deposited mass spectrometry imaging datasets for

Use when when you have aligned and quantified mass spectrometry features

Use when after LC-MS data acquisition is complete (or during real-time

Use when you have raw MS2 spectra from a sample and need to collapse

Use when you have a raw or pre-processed LC-MS feature table with multiple

Use when you have paired genomic-metabolomic link scores (e.

'Use when when you have paired microbiome and metabolome data and need

Use when you have computed multiple independent scoring functions (e.g.,

Use when you have access to a tool with published performance claims

Use when you have implemented or reconstructed a performance-critical

Use when you have a pretrained model with documented performance on a

Use when after running NOREVA's assessment functions (normulticlassqcall,

Use when when you have access to a set of gallery or benchmark scripts

Use when you have identified a claim that one tool outperforms another

Use when when a trained model produces probabilistic or ensemble predictions

Use when you are building a standalone Perl application for Windows that

Use when after running PERMANOVA on distance matrices derived from FT-ICR

Use when you have normalized peak intensities or abundance matrices from

Use when after computing Multi-Block Variable Importance in Projection

Use when you have BGC sequences (in FASTA or GenBank format) and need

Use when when you have a set of Biosynthetic Gene Clusters (BGCs) in

Use when you have a feature list (containing m/z, retention time, and

Use when you have centroided data-dependent acquisition (ddMS2) mzML

Use when you have centroided MS2 spectra (ddMS2 data in mzML format)

Use when when you have a feature list (m/z, retention time, intensity)

Use when you have detected features in LC- or GC-HRMS data (via pyOpenMS

Use when you have an m/z-resolved feature list from LC- or GC-HRMS analysis

Use when when you have a parent drug's raw chemical formula and need

Use when after computing a pathway dysregulation score matrix (PDSmatrix)

Use when after generating a Chemical Feature Tree from q2-qemistree (or

Use when when you have validated RDKit molecule objects derived from

Use when you have one or more peptide or protein sequences in string

Use when when you have cloned or downloaded a Python project repository

Use when you have identified all pinned software dependencies for a Python

Use when you have a published computational pipeline with deposited code

Use when before launching the DaDIA metabolomics pipeline or any multi-package

Use when you have raw line-scan mass spectrometry imaging data from nano-DESI

Use when after normalizing an MSI pixel array to TIC or an internal standard,

Use when lA-ICP-MS image data contains isolated spike outliers (single

Use when use PLAGE when you have log2-transformed, standardized metabolite

Use when after community-dependent gap-filling has proposed reactions

Use when when your metadata table contains species, genus, or family

Use when when you have mass spectrometry raw data (DI-MS or ASAP-MS format)

Use when you have NMR-based metabolomics measurements from a cohort containing

Use when after uploading a sample list to InjectionDesign and before